Version 5.4
Homo sapiens Gene: COL22A1
Summary
InnateDB Gene IDBG-36789.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol COL22A1
Gene Name collagen, type XXII, alpha 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000169436
Encoded Proteins
IDBP-36791
collagen, type XXII, alpha 1
IDBP-376868
collagen, type XXII, alpha 1
IDBP-478695
collagen, type XXII, alpha 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary COL22A1, a member of the FACIT (fibrillar-associated collagens with interrupted triple helices) subgroup of the collagen protein family, specifically localizes to tissue junctions (Koch et al., 2004 [PubMed 15016833]).[supplied by OMIM, Mar 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 8:138588235-138914006
Strand Reverse strand
Band q24.3
Transcripts
ENST00000303045 ENSP00000303153
ENST00000341807
ENST00000435777 ENSP00000387655
ENST00000487854
ENST00000522546 ENSP00000428244
ENST00000517515
ENST00000484387
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
Gene Ontology

Molecular Function
Accession GO Term
Biological Process
GO:0030198 extracellular matrix organization
Cellular Component
GO:0005576 extracellular region
GO:0005578 proteinaceous extracellular matrix
GO:0005581 collagen trimer
GO:0005788 endoplasmic reticulum lumen
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000079022
View Gene Order
ENSBTAG00000015374
Not yet available
Pathways
NETPATH
REACTOME
REACT_121139
Collagen biosynthesis and modifying enzymes pathway
REACT_118779
Extracellular matrix organization pathway
REACT_120729
Collagen formation pathway
KEGG
hsa04974
Protein digestion and absorption pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.117169 Hs.604416 Hs.734653
RefSeq NM_152888 XM_006716513
HUGO
OMIM
CCDS CCDS6376
HPRD 09885
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca