Version 5.4
Bos taurus Gene: LSM5
Summary
InnateDB Gene IDBG-633320.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol LSM5
Gene Name U6 snRNA-associated Sm-like protein LSm5
Synonyms
Species Bos taurus
Ensembl Gene ENSBTAG00000002332
Encoded Proteins
IDBP-685018
U6 snRNA-associated Sm-like protein LSm5
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000106355:
Sm-like proteins were identified in a variety of organisms based on sequence homology with the Sm protein family (see SNRPD2; MIM 601061). Sm-like proteins contain the Sm sequence motif, which consists of 2 regions separated by a linker of variable length that folds as a loop. The Sm-like proteins are thought to form a stable heteromer present in tri-snRNP particles, which are important for pre-mRNA splicing.[supplied by OMIM, Apr 2004]
Gene Information
Type Protein coding
Genomic Location Chromosome 4:64411819-64415413
Strand Forward strand
Band
Transcripts
ENSBTAT00000003010 ENSBTAP00000003010
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 18 interaction(s) predicted by orthology.
Predicted by orthology
Total 18 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0030529 ribonucleoprotein complex
Orthologs
Species
Homo sapiens
Mus musculus
Gene ID
Gene Order
ENSG00000106355
View Gene Order
ENSMUSG00000091625
View Gene Order
Pathways
NETPATH
REACTOME
REACT_207715
mRNA decay by 5' to 3' exoribonuclease pathway
REACT_226022
Gene Expression pathway
REACT_203426
Deadenylation-dependent mRNA decay pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_20518
mRNA decay by 5' to 3' exoribonuclease pathway
REACT_20639
Deadenylation-dependent mRNA decay pathway
REACT_71
Gene Expression pathway
REACT_261877
mRNA decay by 5' to 3' exoribonuclease pathway
REACT_233572
Gene Expression pathway
REACT_235784
Deadenylation-dependent mRNA decay pathway
KEGG
hsa03018
RNA degradation pathway
hsa03040
Spliceosome pathway
mmu03018
RNA degradation pathway
mmu03040
Spliceosome pathway
INOH
PID NCI
Cross-References
SwissProt Q2HJH0
TrEMBL
UniProt Splice Variant
Entrez Gene 615136
UniGene Bt.43458
RefSeq NM_001046553
HUGO
OMIM
CCDS
HPRD
IMGT
EMBL BC105404
GenPept AAI05405
RNA Seq Atlas 615136

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca