Version 5.4
Bos taurus Gene: PRDM5
Summary
InnateDB Gene IDBG-639787.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PRDM5
Gene Name PR domain zinc finger protein 5
Synonyms
Species Bos taurus
Ensembl Gene ENSBTAG00000012111
Encoded Proteins
IDBP-691979
PR domain containing 5
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000138738:
The protein encoded by this gene is a transcription factor of the PR-domain protein family. It contains a PR-domain and multiple zinc finger motifs. Transcription factors of the PR-domain family are known to be involved in cell differentiation and tumorigenesis. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 6:4491175-4743136
Strand Forward strand
Band
Transcripts
ENSBTAT00000049757 ENSBTAP00000046605
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000976 transcription regulatory region sequence-specific DNA binding
GO:0003676 nucleic acid binding
GO:0005515 protein binding
GO:0043565 sequence-specific DNA binding
GO:0044212 transcription regulatory region DNA binding
GO:0046872 metal ion binding
GO:0070491 repressing transcription factor binding
Biological Process
GO:0000278 mitotic cell cycle
GO:0016575 histone deacetylation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0051567 histone H3-K9 methylation
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Homo sapiens
Mus musculus
Gene ID
Gene Order
ENSG00000138738
View Gene Order
ENSMUSG00000029913
View Gene Order
Cross-References
SwissProt
TrEMBL F1MFG2
UniProt Splice Variant
Entrez Gene 537500
UniGene Bt.26248
RefSeq NM_001192907
HUGO HGNC:9349
OMIM
CCDS
HPRD
IMGT
EMBL DAAA02015268 DAAA02015269 DAAA02015270 DAAA02015271 DAAA02015272 DAAA02015273 DAAA02015274 DAAA02015275 DAAA02015276
GenPept
RNA Seq Atlas 537500

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca