Version 5.4
Homo sapiens Gene: PRPF40A
Summary
InnateDB Gene IDBG-72518.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PRPF40A
Gene Name PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000196504
Encoded Proteins
IDBP-72520
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
IDBP-294012
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
IDBP-386627
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
IDBP-597415
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
IDBP-586220
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 2:152651593-152717997
Strand Reverse strand
Band q23.3
Transcripts
ENST00000354363 ENSP00000346332
ENST00000410080 ENSP00000386458
ENST00000448428 ENSP00000406924
ENST00000450303
ENST00000471701
ENST00000471167
ENST00000472760
ENST00000493468 ENSP00000441656
ENST00000467114
ENST00000489741
ENST00000486100
ENST00000545856 ENSP00000444656
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 209 experimentally validated interaction(s) in this database.
They are also associated with 5 interaction(s) predicted by orthology.
Experimentally validated
Total 209 [view]
Protein-Protein 209 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 5 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
GO:0070064 proline-rich region binding
Biological Process
GO:0006397 mRNA processing
GO:0007010 cytoskeleton organization
GO:0007049 cell cycle
GO:0008360 regulation of cell shape
GO:0008380 RNA splicing
GO:0016477 cell migration
GO:0032465 regulation of cytokinesis
GO:0051301 cell division
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0016020 membrane
GO:0016363 nuclear matrix
GO:0016607 nuclear speck
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000061136
View Gene Order
ENSBTAG00000048151
Not yet available
Pathways
NETPATH
REACTOME
KEGG
hsa03040
Spliceosome pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.643580 Hs.714901
RefSeq NM_017892 XM_005246676 XM_005246677 XM_005246678 XM_005246679
HUGO
OMIM
CCDS CCDS46430
HPRD
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca