Version 5.4
Mus musculus Gene: Prpf40a
Summary
InnateDB Gene IDBG-171245.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Prpf40a
Gene Name PRP40 pre-mRNA processing factor 40 homolog A (yeast)
Synonyms 2810012K09Rik; FBP11; Fnbp11; Fnbp3
Species Mus musculus
Ensembl Gene ENSMUSG00000061136
Encoded Proteins
IDBP-171249
PRP40 pre-mRNA processing factor 40 homolog A (yeast)
IDBP-542831
PRP40 pre-mRNA processing factor 40 homolog A (yeast)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000196504:
Gene Information
Type Protein coding
Genomic Location Chromosome 2:53134704-53191284
Strand Reverse strand
Band C1.1
Transcripts
ENSMUST00000076313 ENSMUSP00000075655
ENSMUST00000133384
ENSMUST00000125243 ENSMUSP00000117406
ENSMUST00000152922
ENSMUST00000132031
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 15 experimentally validated interaction(s) in this database.
They are also associated with 91 interaction(s) predicted by orthology.
Experimentally validated
Total 15 [view]
Protein-Protein 15 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 91 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
GO:0070064 proline-rich region binding
Biological Process
GO:0006397 mRNA processing
GO:0007010 cytoskeleton organization
GO:0008360 regulation of cell shape
GO:0008380 RNA splicing
GO:0016477 cell migration
GO:0032465 regulation of cytokinesis
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0016020 membrane
GO:0016363 nuclear matrix
GO:0016607 nuclear speck
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000196504
View Gene Order
ENSBTAG00000048151
Not yet available
Pathways
NETPATH
REACTOME
KEGG
mmu03040
Spliceosome pathway
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
KEGG
hsa03040
Spliceosome pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.257474 Mm.392945 Mm.393219 Mm.406416 Mm.486887
RefSeq NM_018785 XM_006498192 XM_006498194 XM_006498195 XM_006498196
OMIM
CCDS CCDS16038
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca