InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Gene: Snrpd1

Summary

InnateDB Gene

IDBG-128492.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

Snrpd1

Gene Name

small nuclear ribonucleoprotein D1

Synonyms

AA407109; AL023031; SMD1

Species

Mus musculus

Ensembl Gene

ENSMUSG00000002477

Encoded Proteins

IDBP-128494

small nuclear ribonucleoprotein D1

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

Entrez Gene

Summary

This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000167088:
This gene encodes a small nuclear ribonucleoprotein that belongs to the SNRNP core protein family. The protein may act as a charged protein scaffold to promote SNRNP assembly or strengthen SNRNP-SNRNP interactions through nonspecific electrostatic contacts with RNA. [provided by RefSeq, Jul 2008]
This gene encodes a small nuclear ribonucleoprotein that belongs to the SNRNP core protein family. The protein may act as a charged protein scaffold to promote SNRNP assembly or strengthen SNRNP-SNRNP interactions through nonspecific electrostatic contacts with RNA. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2014]

Gene Information

Type

Protein coding

Genomic Location

Chromosome 18:10617796-10628230

Strand

Forward strand

Band

Transcripts

ENSMUST00000002551

ENSMUSP00000002551

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 16 experimentally validated interaction(s) in this database.
They are also associated with 84 interaction(s) predicted by orthology.

Experimentally validated
Total	16 [view]
Protein-Protein	16 [view]
Protein-DNA	0
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	84 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0005515	protein binding
GO:0044822	poly(A) RNA binding

Biological Process

GO:0000387

spliceosomal snRNP assembly

Cellular Component

GO:0005634	nucleus
GO:0005685	U1 snRNP
GO:0005687	U4 snRNP
GO:0005689	U12-type spliceosomal complex
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0034709	methylosome
GO:0034715	pICln-Sm protein complex
GO:0034719	SMN-Sm protein complex
GO:0071013	catalytic step 2 spliceosome