Version 5.4
Mus musculus Gene: Synpo
Summary
InnateDB Gene IDBG-150069.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Synpo
Gene Name synaptopodin
Synonyms 9030217H17Rik; 9130229N11; 9330140I15Rik; AW046661
Species Mus musculus
Ensembl Gene ENSMUSG00000043079
Encoded Proteins
IDBP-150071
synaptopodin
IDBP-249911
synaptopodin
IDBP-535092
synaptopodin
IDBP-533623
synaptopodin
IDBP-540060
synaptopodin
IDBP-537481
synaptopodin
IDBP-541484
synaptopodin
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000171992:
Synaptopodin is an actin-associated protein that may play a role in actin-based cell shape and motility. The name synaptopodin derives from the protein's associations with postsynaptic densities and dendritic spines and with renal podocytes (Mundel et al., 1997 [PubMed 9314539]).[supplied by OMIM, Mar 2008]
Synaptopodin is an actin-associated protein that may play a role in actin-based cell shape and motility. The name synaptopodin derives from the protein\'s associations with postsynaptic densities and dendritic spines and with renal podocytes (Mundel et al., 1997 [PubMed 9314539]).[supplied by OMIM, Mar 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 18:60593973-60660142
Strand Reverse strand
Band D3
Transcripts
ENSMUST00000097566 ENSMUSP00000095174
ENSMUST00000115318 ENSMUSP00000110973
ENSMUST00000130044 ENSMUSP00000121756
ENSMUST00000130360 ENSMUSP00000115355
ENSMUST00000128528
ENSMUST00000155195 ENSMUSP00000117897
ENSMUST00000143275 ENSMUSP00000125272
ENSMUST00000123288 ENSMUSP00000124122
ENSMUST00000160395
ENSMUST00000137894
ENSMUST00000154857
ENSMUST00000139236
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 7 interaction(s) predicted by orthology.
Predicted by orthology
Total 7 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003779 actin binding
GO:0005515 protein binding
Biological Process
GO:0030865 cortical cytoskeleton organization
GO:0032233 positive regulation of actin filament bundle assembly
GO:0051492 regulation of stress fiber assembly
Cellular Component
GO:0001725 stress fiber
GO:0005737 cytoplasm
GO:0005923 tight junction
GO:0014069 postsynaptic density
GO:0015629 actin cytoskeleton
GO:0030425 dendrite
GO:0043197 dendritic spine
GO:0043204 perikaryon
GO:0045211 postsynaptic membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000171992
View Gene Order
ENSBTAG00000013744
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.252321 Mm.440740
RefSeq NM_001109975 NM_177340 XM_006525468 XM_006525469 XM_006525470 XM_006525471 XM_006525472 XM_006525473 XM_006525474 XM_006525475 XM_006525476
OMIM
CCDS CCDS37833 CCDS50298
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca