Version 5.4
Mus musculus Gene: Rod1
Summary
InnateDB Gene IDBG-151323.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rod1
Gene Name ROD1 regulator of differentiation 1 (S. pombe)
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000028382
Encoded Proteins
IDBP-151325
ROD1 regulator of differentiation 1 (S. pombe)
IDBP-151327
ROD1 regulator of differentiation 1 (S. pombe)
IDBP-625249
ROD1 regulator of differentiation 1 (S. pombe)
IDBP-542275
ROD1 regulator of differentiation 1 (S. pombe)
IDBP-538728
ROD1 regulator of differentiation 1 (S. pombe)
IDBP-625240
ROD1 regulator of differentiation 1 (S. pombe)
IDBP-625244
ROD1 regulator of differentiation 1 (S. pombe)
IDBP-625246
ROD1 regulator of differentiation 1 (S. pombe)
IDBP-625247
ROD1 regulator of differentiation 1 (S. pombe)
IDBP-625248
ROD1 regulator of differentiation 1 (S. pombe)
IDBP-625250
ROD1 regulator of differentiation 1 (S. pombe)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000119314:
The protein encoded by this gene binds RNA and is a regulator of cell differentiation. The encoded protein preferentially binds to poly(G) and poly(U) sequences in vitro. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 4:59471868-59549364
Strand Reverse strand
Band B3
Transcripts
ENSMUST00000030076 ENSMUSP00000030076
ENSMUST00000102883 ENSMUSP00000099947
ENSMUST00000134879 ENSMUSP00000134490
ENSMUST00000151313
ENSMUST00000148331 ENSMUSP00000122840
ENSMUST00000140925 ENSMUSP00000122138
ENSMUST00000174586 ENSMUSP00000133612
ENSMUST00000173699 ENSMUSP00000134290
ENSMUST00000172768 ENSMUSP00000134102
ENSMUST00000173268
ENSMUST00000172471 ENSMUSP00000133886
ENSMUST00000174748 ENSMUSP00000133884
ENSMUST00000173884 ENSMUSP00000133996
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 7 experimentally validated interaction(s) in this database.
They are also associated with 12 interaction(s) predicted by orthology.
Experimentally validated
Total 7 [view]
Protein-Protein 6 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 12 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0033119 negative regulation of RNA splicing
GO:0043249 erythrocyte maturation
GO:0045595 regulation of cell differentiation
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000119314
View Gene Order
ENSBTAG00000016750
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.331640 Mm.416093 Mm.490588
RefSeq NM_144904 NM_178164 XM_006537851 XM_006537852 XM_006537853 XM_006537854
OMIM
CCDS CCDS18220 CCDS18221
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca