Version 5.4
Mus musculus Gene: Rnf220
Summary
InnateDB Gene IDBG-179719.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rnf220
Gene Name ring finger protein 220
Synonyms 4732477A13; 4931406I20Rik; 5730503K05Rik; AV302541
Species Mus musculus
Ensembl Gene ENSMUSG00000028677
Encoded Proteins
IDBP-179721
ring finger protein 220
IDBP-179723
ring finger protein 220
IDBP-179727
ring finger protein 220
IDBP-542970
ring finger protein 220
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000187147:
Gene Information
Type Protein coding
Genomic Location Chromosome 4:117271463-117497052
Strand Reverse strand
Band D1
Transcripts
ENSMUST00000102690 ENSMUSP00000099751
ENSMUST00000030439 ENSMUSP00000030439
ENSMUST00000094853 ENSMUSP00000092449
ENSMUST00000151829
ENSMUST00000128122 ENSMUSP00000114642
ENSMUST00000154974
ENSMUST00000133971
ENSMUST00000150148
ENSMUST00000138435
ENSMUST00000123222
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 5 experimentally validated interaction(s) in this database.
They are also associated with 6 interaction(s) predicted by orthology.
Experimentally validated
Total 5 [view]
Protein-Protein 5 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 6 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016874 ligase activity
Biological Process
GO:0016567 protein ubiquitination
GO:0051865 protein autoubiquitination
Cellular Component
GO:0005737 cytoplasm
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000187147
View Gene Order
ENSBTAG00000012355
Not yet available
Pathways
NETPATH
REACTOME
REACT_236645
Class I MHC mediated antigen processing & presentation pathway
REACT_230745
Immune System pathway
REACT_199115
Antigen processing: Ubiquitination & Proteasome degradation pathway
REACT_229531
Adaptive Immune System pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_75842
Antigen processing: Ubiquitination & Proteasome degradation pathway
REACT_75774
Adaptive Immune System pathway
REACT_6900
Immune System pathway
REACT_75820
Class I MHC mediated antigen processing & presentation pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q6PDX6
TrEMBL A2APN9 Q9D4L6
UniProt Splice Variant
Entrez Gene 66743
UniGene Mm.318331
RefSeq NM_025739 XM_006503287
OMIM
CCDS CCDS18534
HPRD
IMGT
MGI ID MGI:1913993
MGI Symbol Rnf220
EMBL AK016436 AK041785 AK172415 AL645740 AL844169 BC034875 BC056359 BC058415
GenPept AAH34875 AAH56359 AAH58415 BAB30235 BAE20604 BAE42996 CAM20837 CAM20839 CAM23616
RNA Seq Atlas 66743

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca