Version 5.4
Homo sapiens Gene: RNF220
Summary
InnateDB Gene IDBG-97708.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol RNF220
Gene Name ring finger protein 220
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000187147
Encoded Proteins
IDBP-97710
ring finger protein 220
IDBP-97712
ring finger protein 220
IDBP-97716
ring finger protein 220
IDBP-97718
ring finger protein 220
IDBP-382737
ring finger protein 220
IDBP-382743
ring finger protein 220
IDBP-382744
ring finger protein 220
IDBP-807665
ring finger protein 220
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 1:44405194-44651724
Strand Forward strand
Band p34.1
Transcripts
ENST00000355387 ENSP00000347548
ENST00000361799 ENSP00000354872
ENST00000372247 ENSP00000361321
ENST00000335497 ENSP00000335580
ENST00000443020 ENSP00000414640
ENST00000453863 ENSP00000411541
ENST00000440132 ENSP00000388533
ENST00000487332
ENST00000470498
ENST00000496262
ENST00000474064
ENST00000471494
ENST00000488865 ENSP00000475383
ENST00000497469
ENST00000475378
ENST00000484745
ENST00000474394
ENST00000480686
ENST00000474956
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 7 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Experimentally validated
Total 7 [view]
Protein-Protein 7 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016874 ligase activity
Biological Process
GO:0016567 protein ubiquitination
GO:0051865 protein autoubiquitination
Cellular Component
GO:0005737 cytoplasm
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000028677
View Gene Order
ENSBTAG00000012355
Not yet available
Pathways
NETPATH
REACTOME
REACT_75842
Antigen processing: Ubiquitination & Proteasome degradation pathway
REACT_75774
Adaptive Immune System pathway
REACT_6900
Immune System pathway
REACT_75820
Class I MHC mediated antigen processing & presentation pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.456557 Hs.681213 Hs.681897
RefSeq NM_018150 XM_005270994
HUGO
OMIM
CCDS CCDS510
HPRD 13336
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca