Version 5.4
Mus musculus Gene: Rtcd1
Summary
InnateDB Gene IDBG-189975.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rtcd1
Gene Name RNA terminal phosphate cyclase domain 1
Synonyms 2310009A18Rik; AI450277; RPC; Rtcd1
Species Mus musculus
Ensembl Gene ENSMUSG00000000339
Encoded Proteins
IDBP-189977
RNA terminal phosphate cyclase domain 1
IDBP-536930
RNA terminal phosphate cyclase domain 1
IDBP-534912
RNA terminal phosphate cyclase domain 1
IDBP-532904
RNA terminal phosphate cyclase domain 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000137996:
This gene encodes a member of the RNA 3'-phosphate cyclase family. The encoded protein plays a role in RNA metabolism by catalyzing the ATP-dependent conversion of the 3'-phosphate of RNA substrates to a 2',3'-cyclic phosphodiester. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Feb 2012]
This gene encodes a member of the RNA 3\'-phosphate cyclase family. The encoded protein plays a role in RNA metabolism by catalyzing the ATP-dependent conversion of the 3\'-phosphate of RNA substrates to a 2\',3\'-cyclic phosphodiester. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Feb 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:116488963-116508208
Strand Reverse strand
Band G1
Transcripts
ENSMUST00000000348 ENSMUSP00000000348
ENSMUST00000124486
ENSMUST00000140677 ENSMUSP00000117610
ENSMUST00000153005 ENSMUSP00000119463
ENSMUST00000143425 ENSMUSP00000121357
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 25 interaction(s) predicted by orthology.
Predicted by orthology
Total 25 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003824 catalytic activity
GO:0003963 RNA-3'-phosphate cyclase activity
GO:0005524 ATP binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006396 RNA processing
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000137996
View Gene Order
ENSBTAG00000006321
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene
RefSeq NM_025517 XM_006501883 XM_006501884
OMIM
CCDS CCDS17786
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca