Version 5.4
Mus musculus Gene: Raly
Summary
InnateDB Gene IDBG-210483.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Raly
Gene Name hnRNP-associated with lethal yellow
Synonyms AI663842; Merc
Species Mus musculus
Ensembl Gene ENSMUSG00000027593
Encoded Proteins
IDBP-210485
hnRNP-associated with lethal yellow
IDBP-210487
hnRNP-associated with lethal yellow
IDBP-261833
hnRNP-associated with lethal yellow
IDBP-274245
hnRNP-associated with lethal yellow
IDBP-532053
hnRNP-associated with lethal yellow
IDBP-542312
hnRNP-associated with lethal yellow
IDBP-538956
hnRNP-associated with lethal yellow
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000125970:
This gene encodes a member of the heterogeneous nuclear ribonucleoprotein (hnRNP) gene family. This protein may play a role in pre-mRNA splicing and in embryonic development. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 2:154791096-154867261
Strand Forward strand
Band H1
Transcripts
ENSMUST00000029120 ENSMUSP00000029120
ENSMUST00000058089 ENSMUSP00000058105
ENSMUST00000109701 ENSMUSP00000105323
ENSMUST00000116389 ENSMUSP00000112090
ENSMUST00000129137 ENSMUSP00000114185
ENSMUST00000125872 ENSMUSP00000119108
ENSMUST00000140713 ENSMUSP00000119126
ENSMUST00000152038
ENSMUST00000145202
ENSMUST00000151578
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 11 experimentally validated interaction(s) in this database.
They are also associated with 38 interaction(s) predicted by orthology.
Experimentally validated
Total 11 [view]
Protein-Protein 11 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 38 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0071013 catalytic step 2 spliceosome
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000125970
View Gene Order
ENSBTAG00000016524
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.221440
RefSeq NM_001139511 NM_001139512 NM_001139513 NM_023130 XM_006499013
OMIM
CCDS CCDS16939 CCDS50767
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca