Version 5.4
Homo sapiens Gene: RALY
Summary
InnateDB Gene IDBG-67496.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol RALY
Gene Name RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))
Synonyms HNRPCL2; P542
Species Homo sapiens
Ensembl Gene ENSG00000125970
Encoded Proteins
IDBP-26989
RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))
IDBP-67498
RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))
IDBP-67500
RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))
IDBP-372123
RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))
IDBP-372126
RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))
IDBP-372129
RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a member of the heterogeneous nuclear ribonucleoprotein (hnRNP) gene family. This protein may play a role in pre-mRNA splicing and in embryonic development. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 20:33993646-34108308
Strand Forward strand
Band q11.22
Transcripts
ENST00000333552 ENSP00000327522
ENST00000375114 ENSP00000364255
ENST00000246194 ENSP00000246194
ENST00000448364 ENSP00000413638
ENST00000413297 ENSP00000403744
ENST00000442805 ENSP00000415973
ENST00000493399
ENST00000488227
ENST00000481580
ENST00000489384
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 71 experimentally validated interaction(s) in this database.
Experimentally validated
Total 71 [view]
Protein-Protein 70 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
Cellular Component
GO:0005634 nucleus
GO:0071013 catalytic step 2 spliceosome
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000027593
View Gene Order
ENSBTAG00000016524
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.136947
RefSeq NM_007367 NM_016732 XM_005260334 XM_005260336
HUGO
OMIM
CCDS CCDS13229 CCDS13230
HPRD 11480
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca