Version 5.4
Homo sapiens Gene: SMG9
Summary
InnateDB Gene IDBG-55552.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SMG9
Gene Name smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000105771
Encoded Proteins
IDBP-55554
smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
IDBP-761380
IDBP-765821
IDBP-765929
IDBP-760142
IDBP-763340
IDBP-761146
IDBP-763736
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 19:43727992-43754990
Strand Reverse strand
Band q13.31
Transcripts
ENST00000270066 ENSP00000270066
ENST00000594081
ENST00000598886
ENST00000597586 ENSP00000472684
ENST00000595700
ENST00000597598 ENSP00000471442
ENST00000596714 ENSP00000470541
ENST00000601925 ENSP00000470031
ENST00000602222 ENSP00000470451
ENST00000601170 ENSP00000471398
ENST00000598860
ENST00000600097
ENST00000599804 ENSP00000468941
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 13 experimentally validated interaction(s) in this database.
Experimentally validated
Total 13 [view]
Protein-Protein 12 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0042802 identical protein binding
Biological Process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0010467 gene expression
GO:0016070 RNA metabolic process
GO:0016071 mRNA metabolic process
Cellular Component
GO:0005622 intracellular
GO:0005829 cytosol
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000002210
View Gene Order
ENSBTAG00000011815
Not yet available
Pathways
NETPATH
REACTOME
REACT_75822
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) pathway
REACT_75886
Nonsense-Mediated Decay (NMD) pathway
REACT_71
Gene Expression pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q9H0W8
TrEMBL A0A024R0Q0 M0QX70 M0QYR7 M0QZC7 M0QZH1 M0R2N0
UniProt Splice Variant
Entrez Gene 56006
UniGene Hs.466875
RefSeq NM_019108
HUGO HGNC:25763
OMIM 613176
CCDS CCDS33043
HPRD
IMGT
EMBL AC004780 AK022948 AL136606 BC008869 CH471126
GenPept AAC17932 AAH08869 BAB14323 CAB66541 EAW57223 EAW57224 EAW57226
RNA Seq Atlas 56006

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca