Version 5.4
Homo sapiens Gene: USP39
Summary
InnateDB Gene IDBG-59379.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol USP39
Gene Name ubiquitin specific peptidase 39
Synonyms 65K; HSPC332; SAD1; SNRNP65
Species Homo sapiens
Ensembl Gene ENSG00000168883
Encoded Proteins
IDBP-59381
ubiquitin specific peptidase 39
IDBP-295361
ubiquitin specific peptidase 39
IDBP-295374
ubiquitin specific peptidase 39
IDBP-295376
ubiquitin specific peptidase 39
IDBP-381732
ubiquitin specific peptidase 39
IDBP-381736
ubiquitin specific peptidase 39
IDBP-381755
ubiquitin specific peptidase 39
IDBP-381775
ubiquitin specific peptidase 39
IDBP-807689
ubiquitin specific peptidase 39
IDBP-807693
ubiquitin specific peptidase 39
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 2:85602856-85649282
Strand Forward strand
Band p11.2
Transcripts
ENST00000323701 ENSP00000312981
ENST00000409025 ENSP00000386572
ENST00000409470 ENSP00000386864
ENST00000409766 ENSP00000386803
ENST00000448971 ENSP00000396854
ENST00000442708 ENSP00000392911
ENST00000450066 ENSP00000396133
ENST00000455732
ENST00000458268 ENSP00000400690
ENST00000491659
ENST00000459775
ENST00000474572
ENST00000465282
ENST00000493829
ENST00000467885 ENSP00000479885
ENST00000490193
ENST00000481409
ENST00000496047
ENST00000465514
ENST00000613444 ENSP00000484024
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 82 experimentally validated interaction(s) in this database.
Experimentally validated
Total 82 [view]
Protein-Protein 81 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0008270 zinc ion binding
GO:0036459 ubiquitinyl hydrolase activity
Biological Process
GO:0000245 spliceosomal complex assembly
GO:0006397 mRNA processing
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0007049 cell cycle
GO:0008380 RNA splicing
GO:0051301 cell division
Cellular Component
GO:0005681 spliceosomal complex
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000056305
View Gene Order
ENSBTAG00000010691
Not yet available
Pathways
NETPATH
REACTOME
KEGG
hsa03040
Spliceosome pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.614035 Hs.654745 Hs.733451
RefSeq NM_001256725 NM_001256726 NM_001256727 NM_001256728 NM_006590 XM_006711923
HUGO
OMIM
CCDS CCDS33234 CCDS58716 CCDS58717 CCDS74534
HPRD 07165
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca