Bos taurus Gene: BT.41615
Summary
InnateDB Gene IDBG-642974.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol BT.41615
Gene Name DNA-binding protein SATB2
Synonyms
Species Bos taurus
Ensembl Gene ENSBTAG00000016334
Encoded Proteins
Uncharacterized protein
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000119042:
This gene encodes a DNA binding protein that specifically binds nuclear matrix attachment regions. The encoded protein is involved in transcription regulation and chromatin remodeling. Defects in this gene are associated with isolated cleft palate and mental retardation. Alternate splicing results in multiple transcript variants that encode the same protein. [provided by RefSeq, Feb 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 2:88248733-88455821
Strand Reverse strand
Band
Transcripts
ENSBTAT00000021729 ENSBTAP00000021729
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 6 interaction(s) predicted by orthology.
Predicted by orthology
Total 6 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0005515 protein binding
GO:0043565 sequence-specific DNA binding
Biological Process
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001764 neuron migration
GO:0002076 osteoblast development
GO:0006338 chromatin remodeling
GO:0006355 regulation of transcription, DNA-templated
GO:0009880 embryonic pattern specification
GO:0010468 regulation of gene expression
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048704 embryonic skeletal system morphogenesis
GO:0051216 cartilage development
GO:0060021 palate development
GO:0071310 cellular response to organic substance
Cellular Component
GO:0000118 histone deacetylase complex
GO:0005634 nucleus
GO:0005667 transcription factor complex
GO:0005737 cytoplasm
Orthologs
Species
Homo sapiens
Mus musculus
Gene ID
Gene Order
Method
Confidence
Comments
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Cross-References
SwissProt
TrEMBL F1N426
UniProt Splice Variant
Entrez Gene 541192
UniGene Bt.112441
RefSeq NM_001206070 XM_005202662 XM_005202663 XM_005202664
HUGO HGNC:21637
OMIM
CCDS
HPRD
IMGT
EMBL DAAA02005537 DAAA02005538 DAAA02005539 DAAA02005540 DAAA02005541 DAAA02005542 DAAA02005543 DAAA02005544 DAAA02005545 DAAA02005546 DAAA02005547 DAAA02005548 DAAA02005549 DAAA02005550 DAAA02005551 DAAA02005552 DAAA02005553 DAAA02005554 DAAA02005555
GenPept
RNA Seq Atlas 541192
Transcript Frequencies
Tag Count based mRNA-Abundances across 87 different Tissues (TPM).

Based on Data from Bovine Gene Atlas

Tag Count based mRNA-Abundances across 87 different Tissues (TPM)

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