Version 5.4
Mus musculus Gene: Smyd1
Summary
InnateDB Gene IDBG-155362.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Smyd1
Gene Name SET and MYND domain containing 1
Synonyms 4632404M21Rik; Bop; C78565; Zmynd18
Species Mus musculus
Ensembl Gene ENSMUSG00000055027
Encoded Proteins
IDBP-155364
SET and MYND domain containing 1
IDBP-252278
SET and MYND domain containing 1
IDBP-252280
SET and MYND domain containing 1
IDBP-619789
SET and MYND domain containing 1
IDBP-619788
SET and MYND domain containing 1
IDBP-619790
SET and MYND domain containing 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000115593:
Gene Information
Type Protein coding
Genomic Location Chromosome 6:71213940-71322233
Strand Reverse strand
Band C1
Transcripts
ENSMUST00000074301 ENSMUSP00000073911
ENSMUST00000114188 ENSMUSP00000109826
ENSMUST00000114186 ENSMUSP00000109824
ENSMUST00000129630 ENSMUSP00000133300
ENSMUST00000173730 ENSMUSP00000134399
ENSMUST00000173297 ENSMUSP00000133878
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 9 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 9 [view]
Protein-Protein 9 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0003714 transcription corepressor activity
GO:0005515 protein binding
GO:0018024 histone-lysine N-methyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006338 chromatin remodeling
GO:0006351 transcription, DNA-templated
GO:0007507 heart development
GO:0010831 positive regulation of myotube differentiation
GO:0034968 histone lysine methylation
GO:0035914 skeletal muscle cell differentiation
GO:0045663 positive regulation of myoblast differentiation
GO:0045892 negative regulation of transcription, DNA-templated
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000115593
View Gene Order
ENSBTAG00000021120
Not yet available
Cross-References
SwissProt P97443
TrEMBL G3UXZ0 G3UZ94 G5E8R7 Q3UQT9 Q8BMV4
UniProt Splice Variant
Entrez Gene 12180
UniGene Mm.234274 Mm.440892
RefSeq NM_001160127 NM_009762
OMIM
CCDS CCDS20227 CCDS51805
HPRD
IMGT
MGI ID MGI:104790
MGI Symbol Smyd1
EMBL AC160090 AK027936 AK142153 AK142252 BC076601 CH466523 U76371 U76373 U76374
GenPept AAC53020 AAC53021 AAC53022 AAH76601 BAC25673 BAE24950 BAE24995 EDK98933 EDK98934
RNA Seq Atlas 12180

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca