Version 5.4
Mus musculus Gene: Rif1
Summary
InnateDB Gene IDBG-169383.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rif1
Gene Name Rap1 interacting factor 1 homolog (yeast)
Synonyms 5730435J01Rik; 6530403D07Rik; AU016181; AW549474; D2Ertd145e
Species Mus musculus
Ensembl Gene ENSMUSG00000036202
Encoded Proteins
IDBP-169385
Rap1 interacting factor 1 homolog (yeast)
IDBP-255468
Rap1 interacting factor 1 homolog (yeast)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000080345:
This gene encodes a protein that shares homology with the yeast teleomere binding protein, Rap1 interacting factor 1. This protein localizes to aberrant telomeres may be involved in DNA repair. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Apr 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 2:52072837-52122383
Strand Forward strand
Band C1.1
Transcripts
ENSMUST00000069794 ENSMUSP00000064155
ENSMUST00000112693 ENSMUSP00000108313
ENSMUST00000126218
ENSMUST00000145130
ENSMUST00000125116
ENSMUST00000125322
ENSMUST00000125376
ENSMUST00000152178
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 11 experimentally validated interaction(s) in this database.
They are also associated with 105 interaction(s) predicted by orthology.
Experimentally validated
Total 11 [view]
Protein-Protein 11 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 105 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005488 binding
GO:0005515 protein binding
Biological Process
GO:0006974 cellular response to DNA damage stimulus
GO:0007049 cell cycle
GO:0019827 stem cell maintenance
Cellular Component
GO:0000781 chromosome, telomeric region
GO:0001939 female pronucleus
GO:0001940 male pronucleus
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005819 spindle
GO:0005886 plasma membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000080345
View Gene Order
ENSBTAG00000021020
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.254530 Mm.473801
RefSeq NM_175238 XM_006498174 XM_006498177 XM_006498178 XM_006498179
OMIM
CCDS CCDS50583
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca