InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Gene: Arid3b

Summary

InnateDB Gene

IDBG-170953.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

Arid3b

Gene Name

AT rich interactive domain 3B (BRIGHT-like)

Synonyms

Bdp; Dri2

Species

Mus musculus

Ensembl Gene

ENSMUSG00000004661

Encoded Proteins

IDBP-170955

AT rich interactive domain 3B (BRIGHT-like)

IDBP-170959

AT rich interactive domain 3B (BRIGHT-like)

IDBP-252341

AT rich interactive domain 3B (BRIGHT-like)

IDBP-626341

AT rich interactive domain 3B (BRIGHT-like)

IDBP-626346

AT rich interactive domain 3B (BRIGHT-like)

IDBP-626348

AT rich interactive domain 3B (BRIGHT-like)

IDBP-626354

AT rich interactive domain 3B (BRIGHT-like)

IDBP-626359

AT rich interactive domain 3B (BRIGHT-like)

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

Entrez Gene

Summary

This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000179361:
This gene encodes a member of the ARID (AT-rich interaction domain) family of DNA-binding proteins. The encoded protein is homologous with two proteins that bind to the retinoblastoma gene product, and also with the mouse Bright and Drosophila dead ringer proteins. A pseudogene on chromosome 1p31 exists for this gene. Members of the ARID family have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation and possibly in chromatin structure modification. [provided by RefSeq, Jul 2008]

Gene Information

Type

Protein coding

Genomic Location

Chromosome 9:57790353-57836793

Strand

Reverse strand

Band

Transcripts

ENSMUST00000098686	ENSMUSP00000096283
ENSMUST00000004780	ENSMUSP00000004780
ENSMUST00000114165	ENSMUSP00000109802
ENSMUST00000164010	ENSMUSP00000126889
ENSMUST00000171444	ENSMUSP00000130173
ENSMUST00000169563
ENSMUST00000171949	ENSMUSP00000127525
ENSMUST00000164035	ENSMUSP00000131677
ENSMUST00000170477	ENSMUSP00000130902
ENSMUST00000167670

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 4 experimentally validated interaction(s) in this database.
They are also associated with 9 interaction(s) predicted by orthology.

Experimentally validated
Total	4 [view]
Protein-Protein	4 [view]
Protein-DNA	0
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	9 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0000978	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980	RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001077	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001205	RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677	DNA binding

Biological Process

GO:0006351	transcription, DNA-templated
GO:0007275	multicellular organismal development
GO:0045944	positive regulation of transcription from RNA polymerase II promoter

Cellular Component

GO:0005622	intracellular
GO:0005634	nucleus

Orthologs

Species

Homo sapiens

Bos taurus

Gene ID

Gene Order

ENSG00000179361

View Gene Order

ENSBTAG00000011828

Not yet available

Cross-References

SwissProt

TrEMBL

UniProt Splice Variant

Entrez Gene

UniGene

Mm.409575 Mm.425588

RefSeq

NM_019689 XM_006511291 XM_006511292

OMIM

CCDS

CCDS23233

HPRD

IMGT

MGI ID

MGI Symbol

EMBL

GenPept

RNA Seq Atlas