Version 5.4
Mus musculus Gene: H1foo
Summary
InnateDB Gene IDBG-179926.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol H1foo
Gene Name H1 histone family, member O, oocyte-specific
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000042279
Encoded Proteins
IDBP-179928
H1 histone family, member O, oocyte-specific
IDBP-535973
H1 histone family, member O, oocyte-specific
IDBP-539204
H1 histone family, member O, oocyte-specific
IDBP-534941
H1 histone family, member O, oocyte-specific
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000178804:
Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Nucleosomes consist of approximately 146 bp of DNA wrapped around a histone octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. The protein encoded is a member of the histone H1 family. This gene contains introns, unlike most histone genes. The protein encoded is a member of the histone H1 family. The related mouse gene is expressed only in oocytes. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 6:115944938-115950236
Strand Forward strand
Band E3
Transcripts
ENSMUST00000037831 ENSMUSP00000036951
ENSMUST00000161969 ENSMUSP00000123797
ENSMUST00000162084 ENSMUSP00000124090
ENSMUST00000161617 ENSMUSP00000125701
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0031492 nucleosomal DNA binding
Biological Process
GO:0006334 nucleosome assembly
GO:0007126 meiotic nuclear division
GO:0016584 nucleosome positioning
GO:0044030 regulation of DNA methylation
GO:2000737 negative regulation of stem cell differentiation
Cellular Component
GO:0000786 nucleosome
GO:0001674 female germ cell nucleus
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0070062 extracellular vesicular exosome
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000178804
View Gene Order
ENSBTAG00000001812
Not yet available
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
KEGG
INOH
PID NCI
Cross-References
SwissProt Q8VIK3
TrEMBL E0CYL2 E0CZ52
UniProt Splice Variant
Entrez Gene 171506
UniGene Mm.21899
RefSeq NM_138311 XM_006505678
OMIM
CCDS CCDS20447
HPRD
IMGT
MGI ID MGI:2176207
MGI Symbol H1foo
EMBL AC142099 AK135944 AK162137 AY007195 BC137916 CH466523
GenPept AAG01890 AAI37917 BAE22736 BAE36747 EDK99547
RNA Seq Atlas 171506

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca