Version 5.4
Mus musculus Gene: Rnpc3
Summary
InnateDB Gene IDBG-189207.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rnpc3
Gene Name RNA-binding region (RNP1, RRM) containing 3
Synonyms 2810441O16Rik; AI447568; C030014B17Rik
Species Mus musculus
Ensembl Gene ENSMUSG00000027981
Encoded Proteins
IDBP-189209
RNA-binding region (RNP1, RRM) containing 3
IDBP-268559
RNA-binding region (RNP1, RRM) containing 3
IDBP-268561
RNA-binding region (RNP1, RRM) containing 3
IDBP-533672
RNA-binding region (RNP1, RRM) containing 3
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000185946:
Two types of spliceosomes catalyze splicing of pre-mRNAs. The major U2-type spliceosome is found in all eukaryotes and removes U2-type introns, which represent more than 99% of pre-mRNA introns. The minor U12-type spliceosome is found in some eukaryotes and removes U12-type introns, which are rare and have distinct splice consensus signals. The U12-type spliceosome consists of several small nuclear RNAs and associated proteins. This gene encodes a 65K protein that is a component of the U12-type spliceosome. This protein contains two RNA recognition motifs (RRMs), suggesting that it may contact one of the small nuclear RNAs of the minor spliceosome. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:113605067-113630149
Strand Reverse strand
Band F3
Transcripts
ENSMUST00000092154 ENSMUSP00000089792
ENSMUST00000106536 ENSMUSP00000102146
ENSMUST00000106535 ENSMUSP00000102145
ENSMUST00000153853 ENSMUSP00000115492
ENSMUST00000132220
ENSMUST00000123232
ENSMUST00000135712
ENSMUST00000127068
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 6 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 6 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003674 molecular_function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
Biological Process
GO:0008150 biological_process
Cellular Component
GO:0005634 nucleus
GO:0005689 U12-type spliceosomal complex
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000185946
View Gene Order
ENSBTAG00000019091
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene 67225
UniGene Mm.316928 Mm.475315
RefSeq NM_001038696 NM_001287015 NM_026043
OMIM
CCDS CCDS17777 CCDS71308
HPRD
IMGT
MGI ID MGI:1914475
MGI Symbol Rnpc3
EMBL
GenPept
RNA Seq Atlas 67225

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca