Version 5.4
Homo sapiens Gene: CALCOCO1
Summary
InnateDB Gene IDBG-37186.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol CALCOCO1
Gene Name calcium binding and coiled-coil domain 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000012822
Encoded Proteins
IDBP-37188
calcium binding and coiled-coil domain 1
IDBP-376611
calcium binding and coiled-coil domain 1
IDBP-716656
IDBP-584443
calcium binding and coiled-coil domain 1
IDBP-593824
calcium binding and coiled-coil domain 1
IDBP-598583
calcium binding and coiled-coil domain 1
IDBP-594060
calcium binding and coiled-coil domain 1
IDBP-583892
calcium binding and coiled-coil domain 1
IDBP-602902
calcium binding and coiled-coil domain 1
IDBP-599687
calcium binding and coiled-coil domain 1
IDBP-600654
calcium binding and coiled-coil domain 1
IDBP-602033
calcium binding and coiled-coil domain 1
IDBP-602609
calcium binding and coiled-coil domain 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 12:53708517-53727745
Strand Reverse strand
Band q13.13
Transcripts
ENST00000262059 ENSP00000262059
ENST00000430117 ENSP00000397189
ENST00000546443 ENSP00000456437
ENST00000548263 ENSP00000447647
ENST00000550804 ENSP00000449960
ENST00000549935
ENST00000549613
ENST00000552282
ENST00000547988
ENST00000551900 ENSP00000450083
ENST00000546619 ENSP00000448621
ENST00000547949
ENST00000553154
ENST00000549784 ENSP00000447117
ENST00000549173 ENSP00000449058
ENST00000548177 ENSP00000446820
ENST00000552623 ENSP00000448026
ENST00000549349 ENSP00000450012
ENST00000549688 ENSP00000449796
ENST00000547885
ENST00000548431
ENST00000546774
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 20 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 20 [view]
Protein-Protein 19 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 1 [view]
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003682 chromatin binding
GO:0003712 transcription cofactor activity
GO:0003713 transcription coactivator activity
GO:0005515 protein binding
GO:0008013 beta-catenin binding
GO:0008022 protein C-terminus binding
GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity
GO:0043565 sequence-specific DNA binding
GO:0044212 transcription regulatory region DNA binding
GO:0070016 armadillo repeat domain binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0007165 signal transduction
GO:0016055 Wnt signaling pathway
GO:0030518 intracellular steroid hormone receptor signaling pathway
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
Cellular Component
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0043231 intracellular membrane-bounded organelle
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000023055
View Gene Order
ENSBTAG00000015016
Not yet available
Pathways
NETPATH
REACTOME
KEGG
INOH
PID NCI
era_genomic_pathway
Validated nuclear estrogen receptor alpha network
Cross-References
SwissProt Q9P1Z2
TrEMBL A0A024RAZ1 F8VPN1 F8VQE3 F8VRQ9 F8VUB3 F8VWP8 F8VXS2 F8VZI3 F8W0X2
UniProt Splice Variant
Entrez Gene 57658
UniGene Hs.156667
RefSeq NM_001143682 NM_020898
HUGO HGNC:29306
OMIM
CCDS CCDS44908 CCDS8864
HPRD
IMGT
EMBL AB040969 AC076968 AF370415 AK027881 AK122773 AL136895 AY211909 AY358397 AY563137 BC003177 CH471054 CR533567
GenPept AAH03177 AAO65163 AAQ15251 AAQ88763 AAT68474 BAA96060 BAB55428 BAG53720 CAB66829 CAG38598 EAW96728 EAW96733
RNA Seq Atlas 57658

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca