Version 5.4
Homo sapiens Gene: ATG13
Summary
InnateDB Gene IDBG-41852.7
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol ATG13
Gene Name autophagy related 13
Synonyms KIAA0652; PARATARG8
Species Homo sapiens
Ensembl Gene ENSG00000175224
Encoded Proteins
IDBP-41856
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-239320
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-603003
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-602419
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-600223
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-585998
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-583816
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-597457
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-601296
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-583804
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-587006
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-586040
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-719154
IDBP-718887
IDBP-718733
IDBP-719432
IDBP-719031
IDBP-719406
IDBP-719328
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 11:46617527-46674818
Strand Forward strand
Band p11.2
Transcripts
ENST00000359513 ENSP00000352500
ENST00000395549 ENSP00000378919
ENST00000529655 ENSP00000433756
ENST00000526715
ENST00000533325 ENSP00000436931
ENST00000530500 ENSP00000434390
ENST00000526508 ENSP00000431974
ENST00000524625 ENSP00000433543
ENST00000530942
ENST00000534610
ENST00000528494 ENSP00000432412
ENST00000528145
ENST00000525850
ENST00000528984
ENST00000527907
ENST00000528704
ENST00000533316
ENST00000531933 ENSP00000434125
ENST00000525009 ENSP00000436174
ENST00000529395 ENSP00000431877
ENST00000532067 ENSP00000437191
ENST00000526485
ENST00000582547 ENSP00000464091
ENST00000577256 ENSP00000462167
ENST00000583249 ENSP00000463998
ENST00000581416 ENSP00000464274
ENST00000581438 ENSP00000463550
ENST00000579280
ENST00000578626 ENSP00000462644
ENST00000580238 ENSP00000463808
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 47 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Experimentally validated
Total 47 [view]
Protein-Protein 47 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0019901 protein kinase binding
Biological Process
GO:0000045 autophagic vacuole assembly
Cellular Component
GO:0000407 pre-autophagosomal structure
GO:0005829 cytosol
GO:0034273 ATG1/UKL1 signaling complex
GO:0070969 ULK1-ATG13-FIP200 complex
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000027244
View Gene Order
ENSBTAG00000017325
Not yet available
Pathways
NETPATH
REACTOME
KEGG
hsa04140
Regulation of autophagy pathway
INOH
PID NCI
mtor_4pathway
mTOR signaling pathway
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene
RefSeq NM_001142673 NM_001205119 NM_001205120 NM_001205121 NM_001205122 NM_014741 XM_005253262 XM_005253263 XM_005253265 XM_005253266 XM_005253268 XM_006718394 XM_006718395 XM_006718396
HUGO
OMIM
CCDS CCDS44582 CCDS55760 CCDS55761 CCDS7921
HPRD 13809
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca