Version 5.4
Homo sapiens Gene: RFX4
Summary
InnateDB Gene IDBG-54856.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol RFX4
Gene Name regulatory factor X, 4 (influences HLA class II expression)
Synonyms NYD-SP10
Species Homo sapiens
Ensembl Gene ENSG00000111783
Encoded Proteins
IDBP-54858
regulatory factor X, 4 (influences HLA class II expression)
IDBP-54862
regulatory factor X, 4 (influences HLA class II expression)
IDBP-244832
regulatory factor X, 4 (influences HLA class II expression)
IDBP-596255
regulatory factor X, 4 (influences HLA class II expression)
IDBP-584720
regulatory factor X, 4 (influences HLA class II expression)
IDBP-808404
regulatory factor X, 4 (influences HLA class II expression)
IDBP-586791
regulatory factor X, 4 (influences HLA class II expression)
IDBP-596019
regulatory factor X, 4 (influences HLA class II expression)
IDBP-597946
regulatory factor X, 4 (influences HLA class II expression)
IDBP-598713
regulatory factor X, 4 (influences HLA class II expression)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene is a member of the regulatory factor X gene family, which encodes transcription factors that contain a highly-conserved winged helix DNA binding domain. The protein encoded by this gene is structurally related to regulatory factors X1, X2, X3, and X5. It has been shown to interact with itself as well as with regulatory factors X2 and X3, but it does not interact with regulatory factor X1. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 12:106582907-106762803
Strand Forward strand
Band q23.3
Transcripts
ENST00000357881 ENSP00000350552
ENST00000229387 ENSP00000229387
ENST00000392842 ENSP00000376585
ENST00000546882 ENSP00000447423
ENST00000549040 ENSP00000447735
ENST00000539967 ENSP00000473326
ENST00000536722 ENSP00000444163
ENST00000536688
ENST00000552773
ENST00000551640 ENSP00000448694
ENST00000552866 ENSP00000447904
ENST00000552917 ENSP00000449732
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 4 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Experimentally validated
Total 4 [view]
Protein-Protein 4 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0005515 protein binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0021516 dorsal spinal cord development
GO:0021537 telencephalon development
GO:0021696 cerebellar cortex morphogenesis
GO:0021914 negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning
GO:0030900 forebrain development
GO:0030901 midbrain development
GO:0042384 cilium assembly
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0070613 regulation of protein processing
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000020037
View Gene Order
ENSBTAG00000025837
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.388827
RefSeq NM_001206691 NM_032491 NM_213594
HUGO
OMIM
CCDS CCDS55880 CCDS9106 CCDS9108
HPRD 04905
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca