Version 5.4
Mus musculus Gene: Kdm4d
Summary
InnateDB Gene IDBG-134411.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Kdm4d
Gene Name lysine (K)-specific demethylase 4D
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000053914
Encoded Proteins
IDBP-134413
lysine (K)-specific demethylase 4D
IDBP-249177
lysine (K)-specific demethylase 4D
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000186280:
Gene Information
Type Protein coding
Genomic Location Chromosome 9:14462548-14500482
Strand Reverse strand
Band A2
Transcripts
ENSMUST00000058796 ENSMUSP00000061632
ENSMUST00000115647 ENSMUSP00000111311
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 0
Protein-DNA 2 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003674 molecular_function
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0033169 histone H3-K9 demethylation
GO:0055114 oxidation-reduction process
Cellular Component
GO:0005634 nucleus
GO:0072562 blood microparticle
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000186280
View Gene Order
ENSBTAG00000001704
Not yet available
Pathways
NETPATH
REACTOME
REACT_218274
Chromatin organization pathway
REACT_256030
HDMs demethylate histones pathway
REACT_202766
Chromatin modifying enzymes pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_228178
HDMs demethylate histones pathway
REACT_172623
Chromatin organization pathway
REACT_172633
Chromatin modifying enzymes pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q3U2K5
TrEMBL Z4YLE9
UniProt Splice Variant
Entrez Gene 244694
UniGene Mm.240457
RefSeq NM_173433 XM_006510270 XM_006510271
OMIM
CCDS CCDS22822
HPRD
IMGT
MGI ID MGI:3606484
MGI Symbol Kdm4d
EMBL AK030020 AK155227 BC112372 CT485607
GenPept AAI12373 BAC26740 BAE33135 CAM15687 CAX15698
RNA Seq Atlas 244694

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca