Version 5.4
Homo sapiens Gene: GTF2H4
Summary
InnateDB Gene IDBG-237742.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol GTF2H4
Gene Name general transcription factor IIH, polypeptide 4, 52kDa
Synonyms P52; TFB2; TFIIH;
Species Homo sapiens
Ensembl Gene ENSG00000213780
Encoded Proteins
IDBP-76883
general transcription factor IIH, polypeptide 4, 52kDa
IDBP-76889
general transcription factor IIH, polypeptide 4, 52kDa
IDBP-370045
general transcription factor IIH, polypeptide 4, 52kDa
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 6:30908184-30914106
Strand Forward strand
Band p21.33
Transcripts
ENST00000259895 ENSP00000259895
ENST00000376316 ENSP00000365493
ENST00000453897 ENSP00000410160
ENST00000487746
ENST00000483318
ENST00000475845
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 39 experimentally validated interaction(s) in this database.
Experimentally validated
Total 39 [view]
Protein-Protein 34 [view]
Protein-DNA 4 [view]
Protein-RNA 0
DNA-DNA 1 [view]
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0004003 ATP-dependent DNA helicase activity
GO:0004672 protein kinase activity
GO:0005515 protein binding
GO:0008094 DNA-dependent ATPase activity
GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity
Biological Process
GO:0000718 nucleotide-excision repair, DNA damage removal
GO:0006200 ATP catabolic process
GO:0006281 DNA repair
GO:0006283 transcription-coupled nucleotide-excision repair
GO:0006289 nucleotide-excision repair
GO:0006355 regulation of transcription, DNA-templated
GO:0006360 transcription from RNA polymerase I promoter
GO:0006361 transcription initiation from RNA polymerase I promoter
GO:0006362 transcription elongation from RNA polymerase I promoter
GO:0006363 termination of RNA polymerase I transcription
GO:0006366 transcription from RNA polymerase II promoter
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0006368 transcription elongation from RNA polymerase II promoter
GO:0006370 7-methylguanosine mRNA capping
GO:0006468 protein phosphorylation
GO:0010467 gene expression
GO:0016032 viral process
GO:0032508 DNA duplex unwinding
GO:0050434 positive regulation of viral transcription
Cellular Component
GO:0000439 core TFIIH complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005675 holo TFIIH complex
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
ENSMUSG00000001524
View Gene Order
Ortholuge
SSD Ortholog
Ortholog supports species divergence
ENSBTAG00000046757
Not yet available
Ortholuge
SSD Ortholog
Ortholog supports species divergence
Pathways
NETPATH
NetPath_2
AndrogenReceptor pathway
REACTOME
REACT_1851
RNA Polymerase II Transcription Initiation pathway
REACT_846
Formation of the Early Elongation Complex pathway
REACT_1628
Transcription-coupled NER (TC-NER) pathway
REACT_1309
RNA Polymerase I Transcription pathway
REACT_1913
RNA Polymerase I Promoter Escape pathway
REACT_257
Formation of incision complex in GG-NER pathway
REACT_6361
Late Phase of HIV Life Cycle pathway
REACT_6237
RNA Pol II CTD phosphorylation and interaction with CE pathway
REACT_200857
Epigenetic regulation of gene expression pathway
REACT_1655
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening pathway
REACT_311
Dual incision reaction in GG-NER pathway
REACT_1974
RNA Polymerase I Promoter Clearance pathway
REACT_200856
NoRC negatively regulates rRNA expression pathway
REACT_2253
Global Genomic NER (GG-NER) pathway
REACT_6346
Formation of HIV-1 elongation complex containing HIV-1 Tat pathway
REACT_1074
RNA Polymerase I Transcription Termination pathway
REACT_6162
Tat-mediated elongation of the HIV-1 transcript pathway
REACT_1845
Formation of RNA Pol II elongation complex pathway
REACT_6274
HIV Transcription Elongation pathway
REACT_22201
Formation of HIV elongation complex in the absence of HIV Tat pathway
REACT_1366
RNA Polymerase II Transcription pathway
REACT_6253
RNA Polymerase II HIV Promoter Escape pathway
REACT_2222
Dual incision reaction in TC-NER pathway
REACT_2089
RNA Polymerase II Promoter Escape pathway
REACT_6256
HIV Life Cycle pathway
REACT_22107
RNA Polymerase II Pre-transcription Events pathway
REACT_1470
mRNA Capping pathway
REACT_2204
RNA Polymerase I Chain Elongation pathway
REACT_953
RNA Polymerase I Transcription Initiation pathway
REACT_6233
Transcription of the HIV genome pathway
REACT_975
RNA Pol II CTD phosphorylation and interaction with CE pathway
REACT_833
RNA Polymerase II Transcription Elongation pathway
REACT_6185
HIV Infection pathway
REACT_21352
RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription pathway
REACT_1941
Formation of transcription-coupled NER (TC-NER) repair complex pathway
REACT_6332
HIV Transcription Initiation pathway
REACT_6319
Formation of the HIV-1 Early Elongation Complex pathway
REACT_1826
Nucleotide Excision Repair pathway
REACT_71
Gene Expression pathway
REACT_116125
Disease pathway
REACT_834
RNA Polymerase II Transcription Initiation And Promoter Clearance pathway
REACT_216
DNA Repair pathway
REACT_200834
Negative epigenetic regulation of rRNA expression pathway
KEGG
hsa03022
Basal transcription factors pathway
hsa03420
Nucleotide excision repair pathway
INOH
PID BIOCARTA
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.485070
RefSeq NM_001517
HUGO
OMIM
CCDS CCDS34386
HPRD 03456
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca